Parameters Member List

This is the complete list of members for Parameters, including all inherited members.
angle_arrayParameters
assign_angle_index(const char *, const char *, const char *, Angle *, int)Parameters
assign_bond_index(const char *, const char *, Bond *)Parameters
assign_crossterm_index(const char *, const char *, const char *, const char *, const char *, const char *, const char *, const char *, Crossterm *)Parameters
assign_dihedral_index(const char *, const char *, const char *, const char *, Dihedral *, int, int)Parameters
assign_improper_index(const char *, const char *, const char *, const char *, Improper *, int)Parameters
assign_vdw_index(const char *, Atom *)Parameters
atom_type_name(Index a)Parameters [inline]
bond_arrayParameters
columnsizeParameters
crossterm_arrayParameters
dihedral_arrayParameters
done_reading_files(Bool)Parameters
done_reading_structure()Parameters
get_angle_params(Real *k, Real *theta0, Real *k_ub, Real *r_ub, Index index)Parameters [inline]
get_bond_params(Real *k, Real *x0, Index index)Parameters [inline]
get_dihedral_multiplicity(Index index)Parameters [inline]
get_dihedral_params(Real *k, int *n, Real *delta, Index index, int mult)Parameters [inline]
get_improper_multiplicity(Index index)Parameters [inline]
get_improper_params(Real *k, int *n, Real *delta, Index index, int mult)Parameters [inline]
get_int_table_type(char *)Parameters
get_num_vdw_params(void)Parameters [inline]
get_table_pair_params(Index, Index, int *)Parameters
get_vdw_pair_params(Index ind1, Index ind2, Real *, Real *, Real *, Real *)Parameters
get_vdw_params(Real *sigma, Real *epsilon, Real *sigma14, Real *epsilon14, Index index)Parameters [inline]
gromacsPair_arrayParameters
improper_arrayParameters
nbthole_arrayParameters
nbthole_pair_treeParameters
NumAngleParamsParameters
NumBondParamsParameters
NumCosAnglesParameters
NumCrosstermParamsParameters
NumDihedralParamsParameters
numenerentriesParameters
NumGromacsPairParamsParameters
NumImproperParamsParameters
NumNbtholePairParamsParameters
NumTablePairParamsParameters
NumTableParamsParameters
NumVdwPairParamsParameters
NumVdwParamsParameters
NumVdwParamsAssignedParameters
Parameters()Parameters
Parameters(SimParameters *, StringList *f)Parameters
Parameters(Ambertoppar *, BigReal)Parameters
Parameters(const GromacsTopFile *gf, Bool min)Parameters
print_angle_params()Parameters
print_bond_params()Parameters
print_crossterm_params()Parameters
print_dihedral_params()Parameters
print_improper_params()Parameters
print_nbthole_pair_params()Parameters
print_param_summary()Parameters
print_vdw_pair_params()Parameters
print_vdw_params()Parameters
read_charmm_parameter_file(char *)Parameters
read_ener_table(SimParameters *)Parameters
read_energy_type(FILE *, const int, BigReal *, const float, const float)Parameters
read_energy_type_bothcubspline(FILE *, const int, BigReal *, const float, const float)Parameters
read_energy_type_cubspline(FILE *, const int, BigReal *, const float, const float)Parameters
read_parameter_file(char *)Parameters
read_parm(Ambertoppar *, BigReal)Parameters
receive_Parameters(MIStream *)Parameters
rowsizeParameters
send_Parameters(MOStream *)Parameters
tab_pair_treeParameters
table_enerParameters
tablenumtypesParameters
vdw_arrayParameters
vdw_pair_treeParameters
~Parameters()Parameters

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