ComputeNonbondedPair Member List

This is the complete list of members for ComputeNonbondedPair, including all inherited members.
A12_fComputeNonbondedUtil [private, static]
A6_fComputeNonbondedUtil [private, static]
accelMDOnComputeNonbondedUtil [private, static]
alchDecoupleComputeNonbondedUtil [private, static]
alchFepOnComputeNonbondedUtil [private, static]
alchThermIntOnComputeNonbondedUtil [private, static]
alchVdwShiftCoeffComputeNonbondedUtil [private, static]
alchWCAOnComputeNonbondedUtil [private, static]
atomUpdate()ComputePatchPair [virtual]
avgPositionBoxComputeNonbondedPair [protected]
B12_fComputeNonbondedUtil [private, static]
B6_fComputeNonbondedUtil [private, static]
basePriorityCompute [protected]
bornRadBoxComputeNonbondedPair [protected]
c0ComputeNonbondedUtil [private, static]
c1ComputeNonbondedUtil [private, static]
C12_fComputeNonbondedUtil [private, static]
c3ComputeNonbondedUtil [private, static]
c5ComputeNonbondedUtil [private, static]
c6ComputeNonbondedUtil [private, static]
C6_fComputeNonbondedUtil [private, static]
c7ComputeNonbondedUtil [private, static]
c8ComputeNonbondedUtil [private, static]
calc_error(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_fep(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_fullelect_fep(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_fullelect_int(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_int(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_merge_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_merge_fullelect_fep(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_merge_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_merge_fullelect_int(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_merge_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_slow_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_slow_fullelect_fep(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_slow_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_slow_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_energy_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_merge_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_merge_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_merge_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_slow_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_slow_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_slow_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_pair_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_fep(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_fullelect_fep(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_fullelect_int(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_int(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_merge_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_merge_fullelect_fep(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_merge_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_merge_fullelect_int(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_merge_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_slow_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_slow_fullelect_fep(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_slow_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_slow_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_energy_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_merge_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_merge_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_merge_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_slow_fullelect(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_slow_fullelect_go(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_slow_fullelect_les(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_tabener(nonbonded *)ComputeNonbondedUtil [private, static]
calc_self_ti(nonbonded *)ComputeNonbondedUtil [private, static]
calcFullPairComputeNonbondedUtil [private, static]
calcFullPairEnergyComputeNonbondedUtil [private, static]
calcFullSelfComputeNonbondedUtil [private, static]
calcFullSelfEnergyComputeNonbondedUtil [private, static]
calcGBIS(nonbonded *params, GBISParamStruct *gbisParams)ComputeNonbondedUtil [private]
calcMergePairComputeNonbondedUtil [private, static]
calcMergePairEnergyComputeNonbondedUtil [private, static]
calcMergeSelfComputeNonbondedUtil [private, static]
calcMergeSelfEnergyComputeNonbondedUtil [private, static]
calcPairComputeNonbondedUtil [private, static]
calcPairEnergyComputeNonbondedUtil [private, static]
calcSelfComputeNonbondedUtil [private, static]
calcSelfEnergyComputeNonbondedUtil [private, static]
calcSlowPairComputeNonbondedUtil [private, static]
calcSlowPairEnergyComputeNonbondedUtil [private, static]
calcSlowSelfComputeNonbondedUtil [private, static]
calcSlowSelfEnergyComputeNonbondedUtil [private, static]
cidCompute
columnsizeComputeNonbondedUtil [private, static]
commOnlyComputeNonbondedUtil [private, static]
Compute(ComputeID)Compute
ComputeNonbondedPair(ComputeID c, PatchID pid[], int trans[], ComputeNonbondedWorkArrays *_workArrays, int minPartition=0, int maxPartition=1, int numPartitions=1)ComputeNonbondedPair
ComputeNonbondedUtil()ComputeNonbondedUtil [inline, private]
ComputePatchPair(ComputeID c, PatchID pid[], int t[])ComputePatchPair
computeTypeCompute [protected]
corr_tableComputeNonbondedUtil [private, static]
cutoffComputeNonbondedUtil [private, static]
cutoff2ComputeNonbondedUtil [private, static]
cutoff2_fComputeNonbondedUtil [private, static]
cutoff_3ComputeNonbondedUtil [private, static]
cutoff_3_fComputeNonbondedUtil [private, static]
cutoff_6ComputeNonbondedUtil [private, static]
cutoff_6_fComputeNonbondedUtil [private, static]
dEdaSumBoxComputeNonbondedPair [protected]
dHdrPrefixBoxComputeNonbondedPair [protected]
dielectric_1ComputeNonbondedUtil [private, static]
doForce(CompAtom *p[2], CompAtomExt *pExt[2], Results *r[2])ComputeNonbondedPair [protected, virtual]
doWork()ComputePatchPair [virtual]
drudeNbtholeComputeNonbondedUtil [private, static]
electEnergyIndex enum valueComputeNonbondedUtil [private]
electEnergyIndex_s enum valueComputeNonbondedUtil [private]
electEnergyIndex_ti_1 enum valueComputeNonbondedUtil [private]
electEnergyIndex_ti_2 enum valueComputeNonbondedUtil [private]
enqueueWork()Compute [protected]
ewaldcofComputeNonbondedUtil [private, static]
exclChecksumIndex enum valueComputeNonbondedUtil [private]
fast_tableComputeNonbondedUtil [private, static]
finishPatch(int)Compute [virtual]
fixedAtomsOnComputeNonbondedUtil [private, static]
forceBoxComputePatchPair [protected]
full_tableComputeNonbondedUtil [private, static]
fullElectEnergyIndex enum valueComputeNonbondedUtil [private]
fullElectEnergyIndex_s enum valueComputeNonbondedUtil [private]
fullElectEnergyIndex_ti_1 enum valueComputeNonbondedUtil [private]
fullElectEnergyIndex_ti_2 enum valueComputeNonbondedUtil [private]
gbisP2PatchReady(PatchID, int seq)Compute [virtual]
gbisP3PatchReady(PatchID, int seq)Compute [virtual]
gbisParamsComputeNonbondedPair
gbisPhaseCompute [protected]
gbisPhasePriorityCompute [protected]
gbisStepPairlistsComputeNonbondedPair [protected]
getGBISPhase(void)Compute [inline]
getNumPatches()Compute [inline]
goForcesOnComputeNonbondedUtil [private, static]
goGroPairComputeNonbondedUtil [private, static]
goMethodComputeNonbondedUtil [private, static]
goNativeEnergyIndex enum valueComputeNonbondedUtil [private]
goNonnativeEnergyIndex enum valueComputeNonbondedUtil [private]
groGaussEnergyIndex enum valueComputeNonbondedUtil [private]
groLJEnergyIndex enum valueComputeNonbondedUtil [private]
initialize()ComputeNonbondedPair [protected, virtual]
intRadComputeNonbondedPair [protected]
intRadBoxComputeNonbondedPair [protected]
k_vdwaComputeNonbondedUtil [private, static]
k_vdwa_fComputeNonbondedUtil [private, static]
k_vdwbComputeNonbondedUtil [private, static]
k_vdwb_fComputeNonbondedUtil [private, static]
lambda_tableComputeNonbondedUtil [private, static]
ldObjHandleCompute
lesFactorComputeNonbondedUtil [private, static]
lesOnComputeNonbondedUtil [private, static]
lesScalingComputeNonbondedUtil [private, static]
ljTableComputeNonbondedUtil [private, static]
localWorkMsgCompute
maxPartComputeNonbondedPair [protected]
minPartComputeNonbondedPair [protected]
molComputeNonbondedUtil [private, static]
noWork()ComputeNonbondedPair [protected, virtual]
numAtomsComputePatchPair [protected]
numGBISPairlistsComputeNonbondedPair [protected, static]
numPartsComputeNonbondedPair [protected]
pComputePatchPair [protected]
pairInteractionOnComputeNonbondedUtil [private, static]
pairInteractionSelfComputeNonbondedUtil [private, static]
pairlistsComputeNonbondedPair [protected]
pairlistsValidComputeNonbondedPair [protected]
pairlistToleranceComputeNonbondedPair [protected]
pairlistWarningIndex enum valueComputeNonbondedUtil [private]
paramsComputeNonbondedPair
patchComputePatchPair [protected]
patchIDComputePatchPair [protected]
patchReady(PatchID, int doneMigration, int seq)Compute [virtual]
pExtComputePatchPair [protected]
pi_ewaldcofComputeNonbondedUtil [private, static]
positionBoxComputePatchPair [protected]
pressureProfileAtomTypesComputeNonbondedUtil [private, static]
pressureProfileDataComputeNonbondedPair [protected]
pressureProfileMinComputeNonbondedUtil [private, static]
pressureProfileOnComputeNonbondedUtil [private, static]
pressureProfileReductionComputeNonbondedPair [protected]
pressureProfileSlabsComputeNonbondedUtil [private, static]
pressureProfileThicknessComputeNonbondedUtil [private, static]
priority(void)Compute [inline]
psiSumBoxComputeNonbondedPair [protected]
qmForcesOnComputeNonbondedUtil [private, static]
rComputePatchPair [protected]
r2_deltaComputeNonbondedUtil [private, static]
r2_delta_1ComputeNonbondedUtil [private, static]
r2_delta_expComputeNonbondedUtil [private, static]
r2_tableComputeNonbondedUtil [private, static]
reductionComputeNonbondedPair [protected]
reductionDataComputeNonbondedPair [protected]
reductionDataSize enum valueComputeNonbondedUtil [private]
rowsizeComputeNonbondedUtil [private, static]
scale14ComputeNonbondedUtil [private, static]
scalingComputeNonbondedUtil [private, static]
scor_tableComputeNonbondedUtil [private, static]
select(void)ComputeNonbondedUtil [private, static]
sequence(void)Compute [inline]
setNumPatches(int n)Compute [inline]
slow_tableComputeNonbondedUtil [private, static]
square(const BigReal &x, const BigReal &y, const BigReal &z)ComputeNonbondedUtil [inline, private, static]
submitPressureProfileData(BigReal *, SubmitReduction *)ComputeNonbondedUtil [private, static]
submitReductionData(BigReal *, SubmitReduction *)ComputeNonbondedUtil [private, static]
switchOnComputeNonbondedUtil [private, static]
switchOn2ComputeNonbondedUtil [private, static]
switchOn_1ComputeNonbondedUtil [private, static]
switchOn_fComputeNonbondedUtil [private, static]
table_allocComputeNonbondedUtil [private, static]
table_enerComputeNonbondedUtil [private, static]
table_lengthComputeNonbondedUtil [private, static]
table_noshortComputeNonbondedUtil [private, static]
table_shortComputeNonbondedUtil [private, static]
TENSOR enum valueComputeNonbondedUtil [private]
transComputePatchPair [protected]
type()Compute [inline]
v_vdwaComputeNonbondedUtil [private, static]
v_vdwa_fComputeNonbondedUtil [private, static]
v_vdwbComputeNonbondedUtil [private, static]
v_vdwb_fComputeNonbondedUtil [private, static]
vdw_switch_modeComputeNonbondedUtil [private, static]
vdwa_tableComputeNonbondedUtil [private, static]
vdwb_tableComputeNonbondedUtil [private, static]
vdwEnergyIndex enum valueComputeNonbondedUtil [private]
vdwEnergyIndex_s enum valueComputeNonbondedUtil [private]
vdwEnergyIndex_ti_1 enum valueComputeNonbondedUtil [private]
vdwEnergyIndex_ti_2 enum valueComputeNonbondedUtil [private]
vdwForceSwitchingComputeNonbondedUtil [private, static]
VECTOR enum valueComputeNonbondedUtil [private]
velocityBoxComputeNonbondedPair [protected]
workArraysComputeNonbondedPair [protected]
~Compute()Compute [virtual]
~ComputeNonbondedPair()ComputeNonbondedPair
~ComputeNonbondedUtil()ComputeNonbondedUtil [inline, private]
~ComputePatchPair()ComputePatchPair [virtual]

Generated on 12 Nov 2019 for NAMD by  doxygen 1.6.1