NAMD
Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
[detail level 12]
oNeabffunc
oNmsm
oC__sort_entry
oCABoundAngleRestraint
oCABoundDiheRestraint
oCABoundDistRestraint
oCABoundPosRestraint
oCADiheRestraint
oCADistRestraint
oCAFixedAngleRestraint
oCAFixedDiheRestraint
oCAFixedDistRestraint
oCAFixedPosRestraint
oCAForcingAngleRestraint
oCAForcingDiheRestraint
oCAForcingDistRestraint
oCAForcingPosRestraint
oCAGroup
oCALambdaControl
oCALambdaManager
oCAlg7
oCAlgNbor
oCAlgRecBisection
oCAlignVector
oCAnAngleRestraint
oCangle
oCangle_params
oCAngleElem
oCAngleTable
oCAngleValue
oCaniso
oCAnisoElem
oCAPosRestraint
oCARestraint
oCARestraintManager
oCArray
oCassert_ProxyResultVarsizeMsg
oCatom_constants
oCatom_name_info
oCAtomCstInfo
oCatomID_less
oCAtomMap
oCAtomMapper
oCAtomNameIdx
oCAtomsCntPerPatchMsg
oCAtomSigInfo
oCAtomSignature
oCAtomTable
oCAVector
oCBackEnd
oCBasicAtomInfo
oCBOCgroup
oCBOID
oCbond
oCbond_params
oCBondElem
oCBondTable
oCBondValue
oCBoundingBox
oCBox
oCBroadcastClient
oCBroadcastClientElem
oCBroadcastMgr
oCBroadcastMsg
oCC1Matrix
oCC1Vector
oCCheckpointAtomsMsg
oCCheckpointAtomsReqMsg
oCCheckpointMsg
oCClusterCoorElem
oCClusterCoorMsg
oCClusterElem
oCClusterSizeMsg
oCCollectionMaster
oCCollectionMgr
oCCollectLoadsMsg
oCCollectProxyVectorInstance
oCCollectProxyVectorSequence
oCCollectVectorMsg
oCCollectVectorVarMsg
oCcolvarproxy_namdCommunication between colvars and NAMD (implementation of colvarproxy)
oCCommunicate
oCCompAtom
oCCompAtomExt
oCCompute
oCComputeAngles
oCComputeAniso
oCComputeBondedCUDAKernel
oCComputeBonds
oCComputeConsForce
oCComputeConsForceMsg
oCComputeConsTorque
oCComputeCrossterms
oCComputeCUDAMgr
oCComputeCylindricalBC
oCComputeDihedrals
oCComputeDPMEDataMsg
oCComputeDPMEResultsMsg
oCComputeEField
oCComputeEwald
oCComputeEwaldMsg
oCComputeExcls
oCComputeExt
oCComputeExtAtom
oCComputeExtMgr
oCComputeFmmSerial
oCComputeFmmSerialAtom
oCComputeFmmSerialMgr
oCComputeFullDirect
oCComputeGBISAtom
oCComputeGBISser
oCComputeGBISserMgr
oCComputeGlobal
oCComputeGlobalDataMsg
oCComputeGlobalResultsMsg
oCComputeGridForce
oCComputeGromacsPair
oCComputeHomePatch
oCComputeHomePatches
oCComputeHomeTuples
oCComputeImpropers
oCcomputeInfo
oCComputeLCPO
oCComputeMap
oCComputeMapChangeMsg
oCComputeMgr
oCComputeMoa
oCComputeMsm
oCComputeMsmMgr
oCComputeMsmSerial
oCComputeMsmSerialAtom
oCComputeMsmSerialMgr
oCComputeNonbondedCUDA
oCComputeNonbondedMIC
oCComputeNonbondedPair
oCComputeNonbondedSelf
oCComputeNonbondedUtil
oCComputeNonbondedWorkArrays
oCComputePatch
oCComputePatchPair
oCComputePme
oCComputePmeCUDA
oCComputePmeCUDADevice
oCComputePmeCUDAMgr
oCComputePmeMgr
oCComputePmeUtil
oCComputeQM
oCComputeQMAtom
oCComputeQMMgr
oCComputeQMPntChrg
oCComputeRestraints
oCComputeSelfAngles
oCComputeSelfAniso
oCComputeSelfBonds
oCComputeSelfCrossterms
oCComputeSelfDihedrals
oCComputeSelfExcls
oCComputeSelfGromacsPair
oCComputeSelfImpropers
oCComputeSelfThole
oCComputeSelfTuples
oCComputeSphericalBC
oCComputeStir
oCComputeTclBC
oCComputeThole
oCConfigList
oCConstPointer
oCController
oCControllerBroadcasts
oCControllerState
oCcptr_sortop_priority
oCCpuPmeAtomStorage
oCcr_sortop_distance
oCcr_sortop_reverse_priority
oCcrossterm
oCcrossterm_params
oCCrosstermData
oCCrosstermElem
oCCrosstermValue
oCcuda_args_t
oCCudaAngle
oCCudaAngleValue
oCCudaAtom
oCCudaBond
oCCudaBondValue
oCCudaComputeGBISKernel
oCCudaComputeNonbonded
oCCudaComputeNonbondedKernel
oCCudaComputeNonbondedMsg
oCCudaComputeRecord
oCCudaCrossterm
oCCudaCrosstermValue
oCCudaDihedral
oCCudaDihedralValue
oCCudaExclusion
oCCudaFFTCompute
oCCudaForce
oCCudaNonbondedTables
oCCudaPatchRecord
oCCudaPmeAtomStorage
oCCudaPmeKSpaceCompute
oCCudaPmePencilX
oCCudaPmePencilXY
oCCudaPmePencilXYZ
oCCudaPmePencilY
oCCudaPmePencilZ
oCCudaPmeRealSpaceCompute
oCCudaPmeTranspose
oCCudaPmeXInitMsg
oCCudaPmeXYInitMsg
oCCudaPmeXYZInitMsg
oCCudaStaticAssert
oCCudaStaticAssert< true >
oCCudaTileListKernel
oCDataExchanger
oCDataMessage
oCdatastream
oCDataStreamMsg
oCDeviceBuffer
oCDeviceCUDA
oCDeviceDataMsg
oCdihedral
oCdihedral_params
oCDihedralElem
oCDihedralTable
oCDihedralValue
oCdoublecomplex
oCdrude_constants
oCdummyData
oCeABF
oCeABF1D
oCeABF2D
oCEntry
oCEntryGlob
oCEwaldParticle
oCExchangeAtomsMsg
oCExchangeAtomsReqMsg
oCExclElem
oCexclmask
oCExclSigInfo
oCExclusion
oCExclusionCheck
oCExclusionSignature
oCexlist_sortop
oCExtCoordMsg
oCExtForce
oCExtForceMsg
oCFFTCompute
oCFileStack
oCFinishWorkMsg
oCFlags
oCfloat2
oCfloatcomplex
oCFloatVector
oCFmmSerialCoordMsg
oCFmmSerialForceMsg
oCfour_body_consts
oCFullAtom
oCgather_t
oCGBISCoordMsg
oCGBISForceMsg
oCGBISInput
oCGBISInput< 1 >
oCGBISInput< 2 >
oCGBISInput< 3 >
oCGBISParam
oCGBISParam< 1 >
oCGBISParam< 2 >
oCGBISParam< 3 >
oCGBISParamStruct
oCGBISResults
oCGBISResults< 1 >
oCGBISResults< 2 >
oCGBISResults< 3 >
oCGenericAngle
oCGenericAtom
oCGenericBond
oCGenericDihedral
oCGenericMol
oCGlobalMaster
oCGlobalMasterEasy
oCGlobalMasterFreeEnergy
oCGlobalMasterIMD
oCGlobalMasterMisc
oCGlobalMasterServer
oCGlobalMasterSMD
oCGlobalMasterSymmetry
oCGlobalMasterTcl
oCGlobalMasterTest
oCGlobalMasterTMD
oCgo_pair
oCgo_val
oCGridforceFullBaseGrid
oCGridforceFullMainGrid
oCGridforceFullSubGrid
oCGridforceGrid
oCGridforceLiteGrid
oCGridMsg
oCGroGaussPair
oCGroLJPair
oCgromacsPair
oCGromacsPairElem
oCGromacsPairValue
oCGromacsTopFile
oCGroupInitMsg
oCHashPool
oCHashPoolAdaptorT
oCHashReal
oCHashString
oCheapIterator
oCheapRecord
oCHomePatch
oCHomePatchElem
oCHydroBasedMsg
oCHydrogenGroupID
oCidIndxStr
oCijpair
oCijpair_sortop_bit_reversed
oCIMDEnergies
oCIMDheader
oCIMDOutput
oCimproper
oCimproper_params
oCImproperElem
oCImproperValue
oCindexed_nbthole_pair
oCindexed_table_pair
oCindexed_vdw_pair
oCInfoRecord
oCinfostream
oCInitDeviceMsg
oCInitDeviceMsg2
oCInputAtom
oCInt2
oCInt3
oCInterpParams_t
oCintpair
oCIRSet
oCIterator
oCLargeIRSet
oCLattice
oCLCPOAtom
oCLCPONeighborList
oCLdbCoordinator
oCLdbMigrateMsg
oClistNode
oCLJTable
oCLocalID
oCLocalLBInfoMsg
oCLocalPmeInfo
oCLocalWorkMsg
oClphost
oCLSSDataStr
oClssDistSort
oCLSSSubsDat
oCmain
oCMathArray
oCMatrix44x4 matrix class with numerous operators, conversions, etc
oCMatrix4Symmetry
oCMatrix4TMD
oCmaxHeap
oCMeasure
oCmeMMQMGrp
oCmemusageinit
oCMGridforceParams
oCMGridforceParamsList
oCMigrateAtomsCombinedMsg
oCMigrateAtomsMsg
oCMigrationInfo
oCminHeap
oCminpoint
oCMIStream
oCMoaData
oCMolecule
oCMolInfoMsg
oCMolInst
oCMOStream
oCMoveAllByMsg
oCMoveAtomMsg
oCMoveInputAtomsMsg
oCMovePatch
oCMovePatchAtomsMsg
oCMovePatchesMsg
oCMsmBlock
oCMsmBlockKernel
oCMsmBlockMap
oCMsmBlockProxyMsg
oCMsmC1HermiteBlock
oCMsmC1HermiteBlockProxyMsg
oCMsmC1HermiteGridCutoff
oCMsmC1HermiteGridCutoffProxyMsg
oCMsmC1HermiteGridCutoffSetupMsg
oCMsmGridCutoff
oCMsmGridCutoffInitMsg
oCMsmGridCutoffKernel
oCMsmGridCutoffMap
oCMsmGridCutoffProxyMsg
oCMsmGridCutoffSetupMsg
oCMsmInitMsg
oCMsmProfiler
oCMsmSerialCoordMsg
oCMsmSerialForceMsg
oCMsmTimer
oCNamdCentLB
oCNamdDummyLB
oCNamdHybridLB
oCNamdProfileEvent
oCNamdState
oCnbthole_pair_params
oCnbthole_pair_value
oCnetintStructure used to perform byte swapping operations
oCNL_Msm_t
oCNode
oCNodePmeInfo
oCNodePmeMgr
oCNodeProxyMgr
oCnodesort
oCnonbonded
oCNonbondedCUDASkipMsg
oCNonbondedCUDASlaveMsg
oCNonbondedExclValue
oCNonbondedMICSkipMsg
oCNonbondedMICSlaveMsg
oCNumDevicesMsg
oCObjectArena
oCofstream_namd
oCOutput
oCOutputAtomRecord
oCOwnerBox
oCPairlists
oCPairTable
oCPAL
oCParallelIOMgr
oCParameters
oCparm
oCParseOptions
oCPatch
oCpatch_sortop_curve_a
oCpatch_sortop_curve_b
oCpatch_sortop_curve_c
oCpatchDataStrc
oCPatchElem
oCPatchInfo
oCpatchInfo
oCPatchMap
oCPatchMapMsg
oCPatchMgr
oCPatchPairRecord
oCPatchProxyListMsg
oCPDB
oCPDBAtom
oCPDBAtomRecord
oCPDBData
oCPDBHetatm
oCPDBUnknown
oCpe_sortop_bit_reversed
oCpe_sortop_coord_x
oCpe_sortop_coord_y
oCpid_sortop_reverse_priority
oCPluginIOMgr
oCPmeAckMsg
oCPmeAtomFiler
oCPmeAtomMsg
oCPmeAtomPencilMsg
oCPmeAtomStorage
oCPmeBlockMsg
oCPmeDoneMsg
oCPmeEvirMsg
oCPmeForceMsg
oCPmeForcePencilMsg
oCPmeGrid
oCPmeGridMsg
oCPmeKSpace
oCPmeKSpaceCompute
oCPmeLaunchMsg
oCPmeParticle
oCPmePencil
oCPmePencilInitMsg
oCPmePencilInitMsgData
oCPmePencilMap
oCPmePencilX
oCPmePencilXMap
oCPmePencilXY
oCPmePencilXYMap
oCPmePencilXYZ
oCPmePencilXYZMap
oCPmePencilY
oCPmePencilZ
oCPmeRealSpace
oCPmeRealSpaceCompute
oCPmeRunMsg
oCPmeSharedTransMsg
oCPmeSharedUntransMsg
oCPmeStartMsg
oCPmeTransMsg
oCPmeTranspose
oCPmeUntransMsg
oCPmeXPencil
oCPmeYPencil
oCPmeZPencil
oCpntChrgDist
oCPointer
oCposition_index
oCPressureProfileReduction
oCprocessorInfo
oCProxyCombinedResultMsg
oCProxyCombinedResultRawMsg
oCProxyDataMsg
oCProxyElem
oCProxyGBISP1ResultMsg
oCProxyGBISP2DataMsg
oCProxyGBISP2ResultMsg
oCProxyGBISP3DataMsg
oCProxyListInfo
oCProxyMgr
oCProxyNodeAwareSpanningTreeMsg
oCProxyPatch
oCProxyResultMsg
oCProxyResultVarsizeMsg
oCProxySpanningTreeMsg
oCProxyTree
oCproxyTreeNode
oCProxyUsage
oCProxyUsageKey
oCQMAtomData
oCQMCoordMsg
oCQMForce
oCQMForceMsg
oCQMGrpCalcMsg
oCQMGrpResMsg
oCQMPntChrgMsg
oCqmSolvData
oCRandom
oCRattleParam
oCRebalancer
oCRecBisection
oCRecipVirial_t
oCRecvDeviceMsg
oCReductionMgr
oCReductionRegisterMsg
oCReductionSet
oCReductionSetData
oCReductionSubmitMsg
oCRefineOnly
oCRefineTorusLB
oCrefSelStr
oCRegisterPatchMsg
oCRegisterProxyMsg
oCReplicaDcdAckMsg
oCReplicaDcdDataMsg
oCReplicaDcdInitMsg
oCRequireReduction
oCResidueLookupElem
oCResizeArray
oCResizeArrayIter
oCResizeArrayPrimIter
oCResizeArrayRaw
oCResults
oCScriptParamMsg
oCScriptTcl
oCseg_resid
oCSequencer
oCSetLatticeMsg
oCSimParameters
oCSimpleBroadcastObject
oCSlaveInitMsg
oCSortableResizeArray
oCSortedArray
oCsortop_base
oCsortop_bit_reversed
oCsortop_x
oCsortop_y
oCsortop_z
oCSplitComputesMsg
oCStreamMessage
oCStringList
oCSubmitReduction
oCSync
oCtable_pair_params
oCTaggedMsg
oCTensor
oCthole
oCTholeElem
oCTileExcl
oCTileList
oCTileListStat
oCTileListVirialEnergy
oCTopoManagerWrapper
oCTorusLB
oCTransform
oCTransposeBatch
oCTuplePatchElem
oCTupleSignature
oCUniqueSet
oCUniqueSetIter
oCUniqueSetRaw
oCUniqueSortedArray
oCUnregisterProxyMsg
oCvdw_pair_params
oCvdw_params
oCvdw_val
oCVDWTable
oCvect
oCVector
oCVirialEnergy
oCvmdforce
oCwkf_timer
oCwkfmsgtimer
oCWorkDistrib
oCWorkIndex
\CzVector